Genome browser for Caenorhabditis elegans (WS199)

Showing 16.8 kbp from II, positions 13,175,200 to 13,192,000

Instructions  Instructions Searching: Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed. Navigation: Click one of the rulers to center on a location, or click and drag to select a region. Use the Scroll/Zoom buttons to change magnification and position. Examples: I:8697000..8726000, II:13175200..13192000.
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Data Source Genome browser for Arabidopsis lyrata Genome browser for Arabidopsis thaliana (TAIR9) Genome browser for Caenorhabditis briggsae (WS210) Genome browser for Caenorhabditis elegans (WS199) Genome browser for Caenorhabditis remanei (WS210) Genome browser for Drosophila melanogaster (r5.19) Genome browser for Homo sapiens (hg19) Genome browser for Pristionchus pacificus (WS210)	Scroll/Zoom:    Show 1 Mbp Show 500 kbp Show 200 kbp Show 100 kbp Show 40 kbp Show 20 kbp Show 16.8 kbp Show 10 kbp Show 5 kbp Show 2 kbp Show 1 kbp Show 200 bp Show 100 bp Show 50 bp    Flip

 Overview

 Overview

 Region

 Region

 Details

 Details

Coding Segment

Gene Models

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 Tracks

 Tracks

 Genes

 Genes

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Coding Segment	Non-coding Gene Models	PolyA Site	SL2 Trans-Splice Acceptor
Gene Models	PolyA Signal Sequence	SL1 Trans-Splice Acceptor	Pseudogene

 Misc

 Misc

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Inverted Repeats	Complex Repeats	Transposon	Translated Nucleotide Match (Mass spec genome)
Tandem Repeats	Transposon CDS	Protein Match (wublastx)

 Reagents

 Reagents

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ORFeome Project Primers

Promoterome Primers

 Sequence similarity

 Sequence similarity

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ESTs aligned by BLAT (best)	cDNA aligned to mRNA by BLAT (other)	NEMATODE translated-nucleotide match	OST aligned by BLAT (other)
ESTs aligned by BLAT (other)	ncRNA aligned by BLAT (best)	NEMBASE translated-nucleotide match	TC1 aligned to genome by BLAT (best)
cDNA aligned to mRNA by BLAT (best)	ncRNA aligned by BLAT (other)	OST aligned to EST by BLAT (best)	TC1 aligned to genome by BLAT (other)

 Small RNA

 Small RNA

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ribosomal RNA gene	microRNA gene	small cytoplasmic RNA gene	small nuclear RNA gene
transfer RNA gene	non-coding RNA gene	small nucleolar RNA gene

 Expression Tracks

 Expression Tracks

 Probes

 Probes

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Tiling array probes used for expression estimates

 Serial analysis of gene expression

 Serial analysis of gene expression

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SAGE tag (unique map)

SAGE tag (non-unique map)

 Transcription tiling array experiments

 Transcription tiling array experiments

  mSTAD

  mSTAD

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emb-reference mSTAD	emb-bwm-v2 mSTAD	L2-reference mSTAD	L2-glr mSTAD
emb-AVA mSTAD	emb-coelomocytes mSTAD	L2-panneural mSTAD	L2-intestine mSTAD
emb-panneural mSTAD	emb-dop mSTAD	L2-A-class mSTAD	L3-L4-reference mSTAD
emb-GLP mSTAD	emb-GABA mSTAD	L2-bwm mSTAD	L3-L4-dop mSTAD
emb-BAG mSTAD	emb-hypodermis mSTAD	L2-coelomocytes mSTAD	L3-L4 PVD & OLL mSTAD
emb-PVC mSTAD	emb-intestine mSTAD	L2-excretory-cell mSTAD	YA-reference mSTAD
emb-A-class mSTAD	emb-PhM mSTAD	L2-GABA mSTAD	YA-CEPsh mSTAD

  modMine

  modMine

 All on All off

emb-reference modMine	emb-bwm-v2 modMine	L2-reference modMine	L2-glr modMine
emb-AVA modMine	emb-coelomocytes modMine	L2-panneural modMine	L2-intestine modMine
emb-panneural modMine	emb-dop modMine	L2-A-class modMine	L3-L4-reference modMine
emb-GLP modMine	emb-GABA modMine	L2-bwm modMine	L3-L4-dop modMine
emb-BAG modMine	emb-hypodermis modMine	L2-coelomocytes modMine	L3-L4 PVD & OLL modMine
emb-PVC modMine	emb-intestine modMine	L2-excretory-cell modMine	YA-reference modMine
emb-A-class modMine	emb-PhM modMine	L2-GABA modMine	YA-CEPsh modMine

 Gene Prediction Experiments

 Gene Prediction Experiments

 Ab initio prediction

 Ab initio prediction

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mGene gene models (ab initio)

 RGASP

 RGASP

 RGASP 1.1

 RGASP 1.1

 All on All off

mGene gene models	SRX004863 Gene models (mGene)	SRX001873 Gene models (mGene)
SRX004867 Gene models (mGene)	SRX001875 Gene models (mGene)	SRX001872 Gene models (mGene)
SRX004865 Gene models (mGene)	SRX001874 Gene models (mGene)	mSTAD gene models

 RGASP 1.2

 RGASP 1.2

 All on All off

mGene gene models (with enrichment & filtering)

mGene gene models

mTIM gene models (with enrichment & filtering)

 Display Settings

 Display Settings

Show grid	Image Width 450 640 800 1024 1280 1440 1600	Highlight feature(s) (feature1 feature2...)
Cache tracks	Track Name Table Alphabetic Varying	Highlight regions (region1:start..end region2:start..end)
Draggable tracks	Key position Between Beneath Left Right	Region Size (bp) AUTO 200 kbp 100 kbp 50 kbp
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Genome browser for Caenorhabditis elegans (WS199)

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Generic genome browser version 1.70